rs3155800 SNP Detail

Summary

• ID
  rs3155800
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25234127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATTC ACTTTTAACC CCCTCACCAC
  K
  GTTCCCAAAA CCCTGTCATT GTGCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39537178	mCV25256837	ABI	CRAMUS_MOUSE	f	SNP	T	T				G		T
ss48356872	NES12235493	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T		T		T	T		G	T	G	G		T
ss145372910	ENSMUSSNP5073415	ENSEMBL	ENSEMBL_Sanger	f	SNP	T							T
ss325335465	CHEV_17_25152098	CHEVERUD	SCREENING_POP	f	SNP											T					G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3155800					SNP	T	T	T	T	T	G	T	T	T	T	T	G	T	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48356872	NES12235493	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25234127 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8751	CpG island 8751	532 bp distal
Cpgi8752	CpG island 8752	within coordinates
Cramp1	cramped chromatin regulator 1	within coordinates
Ift140	intraflagellar transport 140	929 bp upstream
Rr339341	regulatory region 339341	within coordinates
Rr405099	regulatory region 405099	607 bp upstream
Tssr143119	transcription start site region 143119	915 bp upstream
Tssr143120	transcription start site region 143120	1190 bp upstream
Tssr143121	transcription start site region 143121	1353 bp upstream
Tssr143122	transcription start site region 143122	1428 bp upstream
Tssr146804	transcription start site region 146804	819 bp upstream
Tssr146805	transcription start site region 146805	536 bp downstream
Tssr146806	transcription start site region 146806	555 bp downstream
Tssr146807	transcription start site region 146807	588 bp downstream
Tssr146808	transcription start site region 146808	613 bp downstream
Tssr146809	transcription start site region 146809	645 bp downstream