rs31558487 SNP Detail

Summary

• ID
  rs31558487
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171019891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTTTAATG ACTTGGAAAT TTAGAAAAGT AGGATGAAAA
  AATCGGTACG CATCCACAGA ACCAACACTT TGAAAAGATA GGGGTTGATT TATCTTCTTC
  Y
  CCTCAGTCAG GATCACAGTC TCCATCATGT CTGCTAGTTA GGGCCCACCA CAGACAGGCG
  GGAAAGATGC ATCGGACTCA CAACACTCTC TATGATCAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49750800	NES13033669	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C	T	C	C	C	C	C	C	C
ss119995992	PARCsnp_1.12073	PARC_SEQ	INBRED	f	SNP							C		T
ss119997596	PARCsnp_1.01067	PARC_SEQ	INBRED	f	SNP							C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31558487					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750800	NES13033669	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171019891 () rs orientation: forward

Symbol	Name	Function Class
Gm70111	predicted gene, 70111	1435 bp downstream
Pcp4l1	Purkinje cell protein 4-like 1	Intron
Rr423238	regulatory region 423238	1976 bp distal