rs31558488 SNP Detail

Summary

• ID
  rs31558488
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171019843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTCAGTGG TTAAGAGCAC
  TGACTGCTCT TCCAGAGGTC CTGAGTTCAG TTCCACATGG TGGTTCACAA TTACCTGTAA
  TGGGATCTGA TGCACTCTAC TGGTGTGTCT GAAGACAGCT ACAGTATGCT CATAAAAATA
  AATCTTTTTT TTTTAATGAC TTGGAAATTT AGAAAAGTAG GATGAAAAAA TCGGTACGCA
  K
  CCACAGAACC AACACTTTGA AAAGATAGGG GTTGATTTAT CTTCTTCCCC TCAGTCAGGA
  TCACAGTCTC CATCATGTCT GCTAGTTAGG GCCCACCACA GACAGGCGGG AAAGATGCAT
  CGGACTCACA ACACTCTCTA TGATCACCTG CCCCACAGAA ACTTGACATT CCGTGAGATA
  ACTGATCAGA GCTGCCGTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45119757	mCV24420693	ABI	CRAMUS_MOUSE	f	SNP		G					T
ss49750801	NES13033668	PERLEGEN	MM_PANEL2	f	SNP	T	G	T	T	T	T		T	T	T	T		T	T	T	G		G
ss320117010	CHEV_1_173122405	CHEVERUD	SCREENING_POP	f	SNP												T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31558488					SNP	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750801	NES13033668	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171019843 () rs orientation: forward

Symbol	Name	Function Class
Gm70111	predicted gene, 70111	1387 bp downstream
Pcp4l1	Purkinje cell protein 4-like 1	Intron
Rr423238	regulatory region 423238	1928 bp distal