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rs31558490 SNP Detail
Summary
  • ID
    rs31558490
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr1:171019519 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CTAAA ATAGCTTGAT ATTTCACTTT
    R
    AGGTTATCCT GGCAAAAGAT ATACC                                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
ss49750803 NES13033693 PERLEGEN MM_PANEL2 f SNP G G A G A A G A G G G G
ss119997591 PARCsnp_1.01064 PARC_SEQ INBRED f SNP A G
ss146156152 ENSMUSSNP5818337 ENSEMBL ENSEMBL_Sanger f SNP G G
ss320117006 CHEV_1_173122081 CHEVERUD SCREENING_POP f SNP G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs31558490 SNP G G A G A A A G G G A G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss49750803 NES13033693 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:171019519 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm70111 predicted gene, 70111 1063 bp downstream
Pcp4l1 Purkinje cell protein 4-like 1 Intron
Rr423237 regulatory region 423237 1865 bp distal
Rr423238 regulatory region 423238 1604 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory

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