rs31558493 SNP Detail

Summary

• ID
  rs31558493
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171018880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTC GGGAGTCAGA GAAAGTCAGA
  S
  TATAGACACT TCCAGAGCAC CCTGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49750808	NES13033717	PERLEGEN	MM_PANEL2	f	SNP	C		C	G	C	G	C		G	C	C	C		G	C	C	C		C
ss119995975	PARCsnp_1.12065	PARC_SEQ	INBRED	f	SNP								G		C
ss119997576	PARCsnp_1.01057	PARC_SEQ	INBRED	f	SNP								G		C
ss146156117	ENSMUSSNP3532309	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
ss320116997	CHEV_1_173121442	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31558493					SNP	C	C	C	G	C	G	C	G	G	C	C	C	C	G	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750808	NES13033717	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171018880 () rs orientation: forward

Symbol	Name	Function Class
Gm70111	predicted gene, 70111	424 bp downstream
Pcp4l1	Purkinje cell protein 4-like 1	Intron
Rr423236	regulatory region 423236	1640 bp distal
Rr423237	regulatory region 423237	1226 bp distal
Rr423238	regulatory region 423238	965 bp distal