rs3155851 SNP Detail

Summary

• ID
  rs3155851
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25103308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATT CCAAGCTCAA CCAGGGTGGA
  Y
  AGACAGATAC ACAGACAGAC ACAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145368897	ENSMUSSNP5017009	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss325334739	CHEV_17_25021279	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs3155851					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25103308 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8747	CpG island 8747	1471 bp proximal
Nubp2	nucleotide binding protein 2	within coordinates
Rr339336	regulatory region 339336	692 bp proximal
Rr405096	regulatory region 405096	1933 bp upstream
Tssr143106	transcription start site region 143106	1628 bp upstream
Tssr143107	transcription start site region 143107	1641 bp upstream
Tssr143108	transcription start site region 143108	1668 bp upstream
Tssr143109	transcription start site region 143109	1686 bp upstream
Tssr146788	transcription start site region 146788	1525 bp downstream
Tssr146789	transcription start site region 146789	1538 bp downstream
Tssr146790	transcription start site region 146790	1566 bp downstream
Tssr146791	transcription start site region 146791	1602 bp downstream
Tssr146792	transcription start site region 146792	1970 bp downstream