rs3155854 SNP Detail

Summary

• ID
  rs3155854
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25104275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAG AGACTCCAAT ACAGGCCAGG
  R
  CCAGCTTCTG GCTTTATCCA ATGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39487812	mCV25251509	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss145368945	ENSMUSSNP258971	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss325334746	CHEV_17_25022246	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3155854					SNP	A	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25104275 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8747	CpG island 8747	504 bp proximal
Nubp2	nucleotide binding protein 2	within coordinates
Rr339336	regulatory region 339336	within coordinates
Rr405096	regulatory region 405096	966 bp upstream
Spsb3	splA/ryanodine receptor domain and SOCS box containing 3	1342 bp upstream
Tssr143106	transcription start site region 143106	661 bp upstream
Tssr143107	transcription start site region 143107	674 bp upstream
Tssr143108	transcription start site region 143108	701 bp upstream
Tssr143109	transcription start site region 143109	719 bp upstream
Tssr143110	transcription start site region 143110	1388 bp upstream
Tssr143111	transcription start site region 143111	1577 bp upstream
Tssr146788	transcription start site region 146788	558 bp downstream
Tssr146789	transcription start site region 146789	571 bp downstream
Tssr146790	transcription start site region 146790	599 bp downstream
Tssr146791	transcription start site region 146791	635 bp downstream
Tssr146792	transcription start site region 146792	1003 bp downstream
Tssr146793	transcription start site region 146793	1082 bp downstream