rs3155855 SNP Detail

Summary

• ID
  rs3155855
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25105190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGT AAACAAGGGG ACATGGGATG
  Y
  TTTGGCGTGG GCCTGCACGC GGTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss39502923	mCV25251520	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss145368950	ENSMUSSNP6603031	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss325334749	CHEV_17_25023161	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs3155855					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25105190 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8747	CpG island 8747	within coordinates
Nubp2	nucleotide binding protein 2	within coordinates
Rr339336	regulatory region 339336	within coordinates
Rr405096	regulatory region 405096	51 bp upstream
Spsb3	splA/ryanodine receptor domain and SOCS box containing 3	427 bp upstream
Tssr143106	transcription start site region 143106	245 bp downstream
Tssr143107	transcription start site region 143107	225 bp downstream
Tssr143108	transcription start site region 143108	199 bp downstream
Tssr143109	transcription start site region 143109	181 bp downstream
Tssr143110	transcription start site region 143110	473 bp upstream
Tssr143111	transcription start site region 143111	662 bp upstream
Tssr146788	transcription start site region 146788	346 bp upstream
Tssr146789	transcription start site region 146789	323 bp upstream
Tssr146790	transcription start site region 146790	307 bp upstream
Tssr146791	transcription start site region 146791	271 bp upstream
Tssr146792	transcription start site region 146792	88 bp downstream
Tssr146793	transcription start site region 146793	167 bp downstream