rs31558562 SNP Detail

Summary

• ID
  rs31558562
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:36727808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGACCAT TCCCTACCCC
  ACGTTTTCTT GCTGCTTGCT CTCCACTCCC GGTTCCCTGC TCCCCTGATT CTGCCGCCAC
  CACGTACTTT CCATCCGCCC CTCACTCTCT GTTCAGGGCG GTGCTGCCTG ACAATCCTGA
  GCTCTCCACA TTCCCCCTTG CTGTCTCCCT CCCTGTTTGA CCTGACTCCA CAGCAGCCAG
  Y
  TGACTAGAGC TCTGGCAGCA AGGACACAGC TGCAGCTACG GCCCCCCAGC CCCGCCTACT
  CAACCCTGCC ACCCAGTGCT CTGTGGCACG GCGTGATCTC TCGCGCGCGC CCCACCGCCC
  TGAGTGCCTG GAGCACACTT GCTCTCCAAC CTGAGCAGAG TTGCTAGAAG ACAGAACGCT
  GCTTCAGGCG CTGCTCTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39301749	mCV23782630	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss147608221	ENSMUSSNP544663	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
ss324923470	CHEV_15_36657319	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31558562					SNP	C	C	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:36727808 () rs orientation: forward

Symbol	Name	Function Class
A830021M18Rik	RIKEN cDNA A830021M18 gene	within coordinates
Cpgi7034	CpG island 7034	within coordinates
Gm41297	predicted gene, 41297	within coordinates
Tssr131079	transcription start site region 131079	1239 bp downstream
Tssr131080	transcription start site region 131080	1185 bp downstream
Tssr131081	transcription start site region 131081	1163 bp downstream
Tssr131082	transcription start site region 131082	868 bp downstream
Tssr131083	transcription start site region 131083	692 bp downstream
Tssr131084	transcription start site region 131084	623 bp downstream