rs3155880 SNP Detail

Summary

• ID
  rs3155880
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25112387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGG TGAGACCTGA ACAGAGGGGA
  Y
  GATCTTTTGG GCTCCAGAGT CTCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39574686	mCV25251789	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss145369155	ENSMUSSNP6779309	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss325334796	CHEV_17_25030358	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3155880					SNP	C	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25112387 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8748	CpG island 8748	1116 bp proximal
Eme2	essential meiotic structure-specific endonuclease subunit 2	within coordinates
Mrps34	mitochondrial ribosomal protein S34	1707 bp upstream
Rr339337	regulatory region 339337	13 bp proximal
Spsb3	splA/ryanodine receptor domain and SOCS box containing 3	1261 bp downstream
Tssr143113	transcription start site region 143113	1704 bp upstream
Tssr146794	transcription start site region 146794	1634 bp downstream