rs3155889 SNP Detail

Summary

• ID
  rs3155889
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25114955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAG AAAAACGGGG ATACCAGCGT
  S
  CAGGAGCCGC TCCTGAACCT GGAGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39575849	mCV25252098	ABI	CRAMUS_MOUSE	f	SNP	G	G					C
ss48357343	NES12239568	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G	G		G	G	G	G		C	G	C	C		G
ss145369210	ENSMUSSNP772134	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss325334807	CHEV_17_25032926	CHEVERUD	SCREENING_POP	f	SNP												G					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3155889					SNP	G	G	G	G	G	G	C	G	G	G	G	G	C	G	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48357343	NES12239568	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25114955 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8748	CpG island 8748	within coordinates
Eme2	essential meiotic structure-specific endonuclease subunit 2	894 bp upstream
Mapk8ip3	mitogen-activated protein kinase 8 interacting protein 3	1525 bp downstream
Mrps34	mitochondrial ribosomal protein S34	within coordinates
Nme3	NME/NM23 nucleoside diphosphate kinase 3	519 bp upstream
Rr339337	regulatory region 339337	within coordinates
Tssr143113	transcription start site region 143113	814 bp downstream
Tssr143114	transcription start site region 143114	439 bp downstream
Tssr143115	transcription start site region 143115	507 bp upstream
Tssr143116	transcription start site region 143116	554 bp upstream
Tssr143117	transcription start site region 143117	628 bp upstream
Tssr146794	transcription start site region 146794	904 bp upstream
Tssr146795	transcription start site region 146795	496 bp upstream