rs31559464 SNP Detail

Summary

• ID
  rs31559464
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171018837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGT AGGTACAGTA GTGGTGGAAG
  R
  ACAGCCTCAG GCAACATTCT TCGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49750809	NES13033716	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	G	A		G	A	A	A		G	A	A	A		A
ss119995973	PARCsnp_1.12064	PARC_SEQ	INBRED	f	SNP								G		A
ss119997575	PARCsnp_1.01056	PARC_SEQ	INBRED	f	SNP								G		A
ss146156115	ENSMUSSNP2735724	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							A
ss320116996	CHEV_1_173121399	CHEVERUD	SCREENING_POP	f	SNP													A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31559464					SNP	A	A	A	G	A	G	A	G	G	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49750809	NES13033716	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171018837 () rs orientation: forward

Symbol	Name	Function Class
Gm70111	predicted gene, 70111	381 bp downstream
Pcp4l1	Purkinje cell protein 4-like 1	Intron
Rr423236	regulatory region 423236	1597 bp distal
Rr423237	regulatory region 423237	1183 bp distal
Rr423238	regulatory region 423238	922 bp distal