rs31559564 SNP Detail

Summary

• ID
  rs31559564
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:79327660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGCACAA ATCCTCACCA
  GAGGCAGCTG GTCTGGACAG CAGTCAGCCT CAGTGGTCAG AGCCCAGGCC GTGGGGCCTT
  GGCAAGACTG AGCAGAACAC AGCAAGCATC AATGTCCTCC TAGCAATGTT ACCACCCAAA
  CCTTCCAACA TGGGCCCAGC TTTCCAAACG TAGGCCTGTT CTGCTGCAGC GCCAGGAGAG
  K
  CATTCAGCTC ATTTAACCCT CTCCAGTGAG GACAGCAGAC AGAGTTGATG TTCACTCTGT
  GGTTTCCAGA AAGGGAATTG GAGGTACCTC AGCCCTCACG CGGGGGTATG GATCAAGGGT
  GAACCTGTCT GGAGATGGAA CTCAGCCAGC GCTGCCTAAA GCCACTCTCC TCCCCTTCTT
  GGTCATCGCA GGTCCTTTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39302171	mCV25428804	ABI	CRAMUS_MOUSE	f	SNP	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31559564					SNP	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:79327660 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7334	CpG island 7334	823 bp distal
Csnk1e	casein kinase 1, epsilon	within coordinates
Rr505648	regulatory region 505648	1653 bp distal
Rr505649	regulatory region 505649	967 bp distal
Tssr135345	transcription start site region 135345	1600 bp upstream
Tssr135346	transcription start site region 135346	1394 bp upstream
Tssr135347	transcription start site region 135347	1353 bp upstream
Tssr135348	transcription start site region 135348	1335 bp upstream