rs31560927 SNP Detail

Summary

• ID
  rs31560927
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78663997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCCTCCT CCCTGTCCCC
  ACCCCCTCCT ATCCCGTCGA CACCCCCCCA AGTTATCGTT CCATCCCCAC ACTCCTCATC
  CCACATCCCC ACCCTCAGGC TACTCCAGCA CAGTCTCTCC ACCAATGAAC GAGCAGCAAG
  CCCTTGGGTA GGAAAACCTA GGACACTCAC TCACACTACT TAGCCCAAGC CTGGCAGGCA
  Y
  GGAGCACGCA CAGGAGCGGG CACTGGGCCC CAGGCATGCA TGGACTCACA GACGCTGCTT
  GCTGTCCAGG AGGCAGGTGA GCAGCAGACA GGTGAACATG CACAGCTGCA TGCTCTTCAC
  AGCCCCCCTG AACACACATG CCCTGGCCAC TCTCCAGCAA TGGGATCCCC CAGGGGCCTT
  ATCAAGGGCC CTCACTTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	PWD/PhJ
ss48065127	NES12079466	PERLEGEN	MM_PANEL2	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	PWD/PhJ
rs31560927					SNP	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48065127	NES12079466	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78663997 () rs orientation: forward

Symbol	Name	Function Class
Card10	caspase recruitment domain family, member 10	within coordinates
Gm62343	predicted gene, 62343	within coordinates
Rr304149	regulatory region 304149	197 bp distal
Rr314476	regulatory region 314476	within coordinates
Tssr131989	transcription start site region 131989	214 bp downstream