rs31562011 SNP Detail

Summary

• ID
  rs31562011
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172347765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTA CTACTAGGGT TTGTCAACAG
  Y
  TTTCCACACT TAGGTTGGAG TAAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49751576	NES13027740	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C	C	C		T	C	C	C		C
ss120011761	PARCsnp_1.19959	PARC_SEQ	INBRED	f	SNP							T	C
ss120014643	PARCsnp_1.10012	PARC_SEQ	INBRED	f	SNP							T	C
ss146194224	ENSMUSSNP5409813	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
ss320125845	CHEV_1_174450329	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31562011					SNP	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751576	NES13027740	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172347765 () rs orientation: forward

Symbol	Name	Function Class
Cfap45	cilia and flagella associated protein 45	932 bp upstream
Cpgi1054	CpG island 1054	765 bp proximal
Gm70635	predicted gene, 70635	1231 bp downstream
Rr372460	regulatory region 372460	within coordinates
Rr423607	regulatory region 423607	1972 bp distal
Rr423608	regulatory region 423608	356 bp proximal
Rr423609	regulatory region 423609	857 bp proximal
Tssr10237	transcription start site region 10237	908 bp upstream