rs31562012 SNP Detail

Summary

• ID
  rs31562012
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172347431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGATGGAAA CCACACCAGC
  ATGTATCACT AAATCCAGAA TAAATGTTTC TTTAAATCAA CTTACATTGC ACAAATACAT
  GACTAAGCAG ACATATTGCT CAGGGCTTTG CTATGAGCCT CACAGTGGCT CACACCAAAC
  AGCAGCCTGG AACGAGGCAC TCCTAACTGG GAGATACCTT CAGGCAGAAC ACTGGGGATC
  R
  ATTTCCTGAT GGCTCACTTG TCACCCTCCT CTCCCTGCCT TTAACTGTTC CTGCGGTGTG
  GCAGGAAGAA CACATCCTTT GTTTTGCAGT GCCCTCTTTT TGGCCTTACT TTGCTGTTTG
  GTGTGGGGGC TAATAACTGC CTAAGAGAGG TGTGGCTAGT AATTGGATTC CCAAGGAGAT
  AAGAGTTGAG GAATCCTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45132761	mCV24953495	ABI	CRAMUS_MOUSE	f	SNP	A	G					G	G
ss49751578	NES13027738	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	G	A		G	G	G		G	A	G	G		A
ss146194214	ENSMUSSNP5492716	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
ss320125842	CHEV_1_174449995	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31562012					SNP	A	G	A	A	G	A	G	G	G	G	A	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751578	NES13027738	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172347431 () rs orientation: forward

Symbol	Name	Function Class
Cfap45	cilia and flagella associated protein 45	1266 bp upstream
Cpgi1054	CpG island 1054	1099 bp proximal
Gm70635	predicted gene, 70635	897 bp downstream
Rr372460	regulatory region 372460	within coordinates
Rr423607	regulatory region 423607	1638 bp distal
Rr423608	regulatory region 423608	690 bp proximal
Rr423609	regulatory region 423609	1191 bp proximal
Tssr10237	transcription start site region 10237	1242 bp upstream