rs31562013 SNP Detail

Summary

• ID
  rs31562013
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172347378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGAAGTT TTCCTAGCCT
  GGAAGAGTCA TAACTGTATG TGCGAGTGCG CGAGTGATGG AAACCACACC AGCATGTATC
  ACTAAATCCA GAATAAATGT TTCTTTAAAT CAACTTACAT TGCACAAATA CATGACTAAG
  CAGACATATT GCTCAGGGCT TTGCTATGAG CCTCACAGTG GCTCACACCA AACAGCAGCC
  K
  GGAACGAGGC ACTCCTAACT GGGAGATACC TTCAGGCAGA ACACTGGGGA TCGATTTCCT
  GATGGCTCAC TTGTCACCCT CCTCTCCCTG CCTTTAACTG TTCCTGCGGT GTGGCAGGAA
  GAACACATCC TTTGTTTTGC AGTGCCCTCT TTTTGGCCTT ACTTTGCTGT TTGGTGTGGG
  GGCTAATAAC TGCCTAAGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49751579	NES13027737	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31562013					SNP	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751579	NES13027737	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172347378 () rs orientation: forward

Symbol	Name	Function Class
Cfap45	cilia and flagella associated protein 45	1319 bp upstream
Cpgi1054	CpG island 1054	1152 bp proximal
Gm70635	predicted gene, 70635	844 bp downstream
Rr372460	regulatory region 372460	within coordinates
Rr423607	regulatory region 423607	1585 bp distal
Rr423608	regulatory region 423608	743 bp proximal
Rr423609	regulatory region 423609	1244 bp proximal
Tssr10237	transcription start site region 10237	1295 bp upstream