rs31562227 SNP Detail

Summary

• ID
  rs31562227
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:118272828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTAGTGC TCATTTTAAA
  TGGCCACCCT CTCTAGAATC TTACATAGGA AGGATGACTG ATTTCACAAC TTAGAGGTAT
  AAGATATGTA TTTGTGTGTG TGTGTGTGTA TTAAGATACA TTACAGGGAG ACACAGCAAA
  AGGGGATTAT TCTAACTTAG TTTCCAGCAG GAGGAGAAAG GGCCAAATAT AAGGGCCACT
  R
  TAGCATTGAA CTTGAAAGGA TTACATGCTG GGGTTTTTTT TTGTGGCCAG AGACTAAAGC
  TCATCTTCCT CCCTAAACTT GCAAACAATT GAGCTGAAAA AAAAATGGGG GGAGGGCAAG
  GAGGGACAGA GTATCACGTA GCCCAGGCTG GCCTCAAACT TACCATGGAT GTAGCCAAGG
  ATGACCTGGA ACTTCTGATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47566327	NES11159885	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31562227					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47566327	NES11159885	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:118272828 () rs orientation: forward

Symbol	Name	Function Class
Gm55302	predicted gene, 55302	883 bp downstream
Plcg2	phospholipase C, gamma 2	within coordinates
Rr670892	regulatory region 670892	1872 bp distal
Rr670893	regulatory region 670893	401 bp proximal
Rr670894	regulatory region 670894	1792 bp proximal