rs31562990 SNP Detail

Summary

• ID
  rs31562990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172304873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAGGCTGTC AAAGCCCCAC ATCACTGTGA ACTCTAACAT
  CTCAGAGGAA GGTGTCTGTA ATATATCTCT GACGTGCTCC ATAGAGAGAG CAGGCATGGA
  Y
  GTGACCTACA TCTGGCTTTC ATCACAGGAC AGCACTAACA CATCCCATGA AGGCTCTGTC
  CTCAGTACAT CCTGGAGGCC TGGTGACAAA GCTCCTTCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss49751698	NES13028075	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	C	T		C	T	C		C	C		T
ss120011366	PARCsnp_1.19761	PARC_SEQ	INBRED	f	SNP							C		T
ss120014423	PARCsnp_1.09792	PARC_SEQ	INBRED	f	SNP							C		T
ss146193233	ENSMUSSNP6195020	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
ss320125604	CHEV_1_174407437	CHEVERUD	SCREENING_POP	f	SNP											T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs31562990					SNP	T	T	T	T	C	T	C	C	T	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751698	NES13028075	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172304873 () rs orientation: forward

Symbol	Name	Function Class
Gm70813	predicted gene, 70813	1256 bp downstream
Gm70814	predicted gene, 70814	1675 bp upstream
Rr423578	regulatory region 423578	1938 bp distal
Slamf9	SLAM family member 9	Coding-Synonymous
Tssr10198	transcription start site region 10198	1922 bp downstream
Tssr10199	transcription start site region 10199	1894 bp downstream
Tssr10200	transcription start site region 10200	1872 bp downstream