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rs31562992 SNP Detail
Summary
  • ID
    rs31562992
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:172304332 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGCAGACTGC TTGTAGTGTG
    GTCTGTTCCA GTGCCTGAGC TTCAGCCACA GGGAAAATGA ACAGGAACAA GGAGGCAATG
    GACACTGAGG CTGTTTCCAT GGAGGTGCCC AAAGCAGTAA GAAAGATAAA GATGGTGTAT
    AGAGCATCAA AGGGCTCTTT TTCACCAAGG AGATTGCTCT AGATAAACAG CTCTCGAAGC
    Y
    TTTATTCCCC TGAGTGGTTC GAGGATTAAT AAACATTTTT CCCTACTTGA AACAAAATTT
    CTTCACCTGC CACATTGAAT CTACTTTGGG TCTTGGAGAG ATGGTTACCA TGTAAAGGTC
    TTTGGGAGGG GGAGGGGTGA TACTATACTG TGTAATCAGT GAGATAGAAG AGGATTTGAA
    GGTAAGAGGG TGTAAAGCTA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
MOLF/EiJ
PWD/PhJ
ss49751700 NES13028073 PERLEGEN MM_PANEL2 f SNP C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
MOLF/EiJ
PWD/PhJ
rs31562992 SNP C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss49751700 NES13028073 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:172304332 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm7804 predicted gene 7804 1951 bp downstream
Gm70809 predicted gene, 70809 1792 bp downstream
Gm70813 predicted gene, 70813 1797 bp downstream
Gm70814 predicted gene, 70814 1134 bp upstream
Rr423578 regulatory region 423578 1397 bp distal
Slamf9 SLAM family member 9 Intron
Tssr10198 transcription start site region 10198 1381 bp downstream
Tssr10199 transcription start site region 10199 1353 bp downstream
Tssr10200 transcription start site region 10200 1331 bp downstream
Tssr15219 transcription start site region 15219 1565 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory