rs31562992 SNP Detail

Summary

• ID
  rs31562992
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172304332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGACTGC TTGTAGTGTG
  GTCTGTTCCA GTGCCTGAGC TTCAGCCACA GGGAAAATGA ACAGGAACAA GGAGGCAATG
  GACACTGAGG CTGTTTCCAT GGAGGTGCCC AAAGCAGTAA GAAAGATAAA GATGGTGTAT
  AGAGCATCAA AGGGCTCTTT TTCACCAAGG AGATTGCTCT AGATAAACAG CTCTCGAAGC
  Y
  TTTATTCCCC TGAGTGGTTC GAGGATTAAT AAACATTTTT CCCTACTTGA AACAAAATTT
  CTTCACCTGC CACATTGAAT CTACTTTGGG TCTTGGAGAG ATGGTTACCA TGTAAAGGTC
  TTTGGGAGGG GGAGGGGTGA TACTATACTG TGTAATCAGT GAGATAGAAG AGGATTTGAA
  GGTAAGAGGG TGTAAAGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss49751700	NES13028073	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs31562992					SNP	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751700	NES13028073	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172304332 () rs orientation: forward

Symbol	Name	Function Class
Gm7804	predicted gene 7804	1951 bp downstream
Gm70809	predicted gene, 70809	1792 bp downstream
Gm70813	predicted gene, 70813	1797 bp downstream
Gm70814	predicted gene, 70814	1134 bp upstream
Rr423578	regulatory region 423578	1397 bp distal
Slamf9	SLAM family member 9	Intron
Tssr10198	transcription start site region 10198	1381 bp downstream
Tssr10199	transcription start site region 10199	1353 bp downstream
Tssr10200	transcription start site region 10200	1331 bp downstream
Tssr15219	transcription start site region 15219	1565 bp upstream