GGCAGACTGC TTGTAGTGTG GTCTGTTCCA GTGCCTGAGC TTCAGCCACA GGGAAAATGA ACAGGAACAA GGAGGCAATG GACACTGAGG CTGTTTCCAT GGAGGTGCCC AAAGCAGTAA GAAAGATAAA GATGGTGTAT AGAGCATCAA AGGGCTCTTT TTCACCAAGG AGATTGCTCT AGATAAACAG CTCTCGAAGC Y TTTATTCCCC TGAGTGGTTC GAGGATTAAT AAACATTTTT CCCTACTTGA AACAAAATTT CTTCACCTGC CACATTGAAT CTACTTTGGG TCTTGGAGAG ATGGTTACCA TGTAAAGGTC TTTGGGAGGG GGAGGGGTGA TACTATACTG TGTAATCAGT GAGATAGAAG AGGATTTGAA GGTAAGAGGG TGTAAAGCTA Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
MOLF/EiJ |
PWD/PhJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss49751700 | NES13028073 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | C | C | T | C | C | C | C |
SNP Consensus Information | |||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
MOLF/EiJ |
PWD/PhJ |
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rs31562992 | SNP | C | C | C | C | C | T | C | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss49751700 | NES13028073 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr1:172304332 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm7804 | predicted gene 7804 | 1951 bp downstream | ||||||
Gm70809 | predicted gene, 70809 | 1792 bp downstream | ||||||
Gm70813 | predicted gene, 70813 | 1797 bp downstream | ||||||
Gm70814 | predicted gene, 70814 | 1134 bp upstream | ||||||
Rr423578 | regulatory region 423578 | 1397 bp distal | ||||||
Slamf9 | SLAM family member 9 | Intron | ||||||
Tssr10198 | transcription start site region 10198 | 1381 bp downstream | ||||||
Tssr10199 | transcription start site region 10199 | 1353 bp downstream | ||||||
Tssr10200 | transcription start site region 10200 | 1331 bp downstream | ||||||
Tssr15219 | transcription start site region 15219 | 1565 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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