rs31563276 SNP Detail

Summary

• ID
  rs31563276
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172344883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAG CCCCGTTCAT GGCACTTTTG
  Y
  GTGGGGATGG AAAGTAGAAC AGAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49751582	NES13027763	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T		C	T	T		C	T	T		T
ss120011733	PARCsnp_1.19945	PARC_SEQ	INBRED	f	SNP						C		T
ss120014626	PARCsnp_1.09995	PARC_SEQ	INBRED	f	SNP						C		T
ss146194146	ENSMUSSNP892520	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					T
ss320125828	CHEV_1_174447447	CHEVERUD	SCREENING_POP	f	SNP										T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31563276					SNP	T	T	T	T	T	C	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751582	NES13027763	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172344883 () rs orientation: forward

Symbol	Name	Function Class
Gm70635	predicted gene, 70635	within coordinates
Rr372460	regulatory region 372460	764 bp upstream
Rr423606	regulatory region 423606	1274 bp distal
Rr423607	regulatory region 423607	889 bp proximal