rs31563928 SNP Detail

Summary

• ID
  rs31563928
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:118274330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCACGGTCTC TGGCTGAGCT CTTGGCCCTT GTTCTTGTCA
  TATAAACTAC AAGCAGCAGA AGGGACTGTT AAGAGGTGGC CGGAATATCA TCCCCGGTAG
  Y
  TGACGTAACT TTGACAGAGA CTTCTTGGGG CTGCAGTTTG TTTCCTTCGG TTCACAGAGC
  AGTGGAATAG GGTCTCTATC CATGAGAACT GCGGTGGGGT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47566348	NES11159714	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31563928					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47566348	NES11159714	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:118274330 () rs orientation: forward

Symbol	Name	Function Class
Gm55302	predicted gene, 55302	565 bp upstream
Plcg2	phospholipase C, gamma 2	within coordinates
Rr670893	regulatory region 670893	906 bp distal
Rr670894	regulatory region 670894	290 bp proximal
Rr670895	regulatory region 670895	654 bp proximal
Tssr79639	transcription start site region 79639	1316 bp upstream