rs31563977 SNP Detail

Summary

• ID
  rs31563977
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:125220242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATAATTT GCCTATTATT
  TTAAGGGTAT CATTTATTTC CATCACTGTA TTGTGTAATA TATAGCTCCA GTAAAGATAA
  TGTACTTAGA GTATGTTACA TTCTATATGT TTATAAATAC ATTGATTTTA TTACCAAAAT
  GGATTTCTTT CTGACTTATT AAAAATGCAA GAGCACACTG TGGAACACAT GTCTCTCTGA
  Y
  GACATGGGTA GCTTTATAGG TGTCACAACC CCTGGCTCTG CTTAATAGGA AGTGAATTTA
  CATTCCTGAA ATCTTGCAAT ATGAGAAACA ATGAGCAGAG TGAAAAGTAC TTTAGAAAAA
  ATGATATCTA TAAAATACCA TAACTAGATA GTTTATGATT GAAGAAGAAA GAACCATTAA
  CATGTCATTG TATGTATGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45546904	mCV22728852	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss135808286	ENSMUSSNP2489940	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
ss320936344	CHEV_3_125129511	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31563977					SNP	C	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125220242 () rs orientation: forward

Symbol	Name	Function Class
Ndst4	N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	Intron
Rr584610	regulatory region 584610	395 bp distal