rs31564114 SNP Detail

Summary

• ID
  rs31564114
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172303078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGCCTCTA TGGACCCCTT ACCAGCTTGT GTTTCCACAG
  CCTAGCCAGC TGACCAAGTC ACTCTTCCCA GGCAAGAGCT GCCAATATGG GGGCCCTTCT
  K
  TGGTCACTCC TGCTGCTGCT TCAGGAAGGT GAGTGGCTCC CTGCTCCTGT ATAAGACTGT
  CTTTATACCC TCTGTTCCAC TTGGCCTTAG GCTGGCAAG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45197166	mCV23005046	ABI	CRAMUS_MOUSE	f	SNP		G	G					G		T
ss49751703	NES13028087	PERLEGEN	MM_PANEL2	f	SNP	G		G	T	G	G	G		G	T	G	G	G	G	G	G
ss120011355	PARCsnp_1.19756	PARC_SEQ	INBRED	f	SNP								G		T
ss120014418	PARCsnp_1.09787	PARC_SEQ	INBRED	f	SNP								G		T
ss146193216	ENSMUSSNP3386145	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31564114					SNP	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751703	NES13028087	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172303078 () rs orientation: forward

Symbol	Name	Function Class
Gm7804	predicted gene 7804	697 bp downstream
Gm70809	predicted gene, 70809	538 bp downstream
Gm70814	predicted gene, 70814	within coordinates
Rr423578	regulatory region 423578	143 bp distal
Slamf9	SLAM family member 9	Coding-Synonymous
Tssr10198	transcription start site region 10198	127 bp downstream
Tssr10199	transcription start site region 10199	99 bp downstream
Tssr10200	transcription start site region 10200	77 bp downstream
Tssr15219	transcription start site region 15219	311 bp upstream