rs31564115 SNP Detail

Summary

• ID
  rs31564115
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172302724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCG ACAGCTGGGT AGTTCGAAGC
  R
  CGTGCATATG TGATTTCTAC GGGAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
ss49751704	NES13028086	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	A	G		A	G	G		G	G
ss120011353	PARCsnp_1.19755	PARC_SEQ	INBRED	f	SNP							A		G
ss120014417	PARCsnp_1.09786	PARC_SEQ	INBRED	f	SNP							A		G
ss146193213	ENSMUSSNP5182252	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
ss320125597	CHEV_1_174405288	CHEVERUD	SCREENING_POP	f	SNP											G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
rs31564115					SNP	G	G	G	G	A	G	A	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751704	NES13028086	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172302724 () rs orientation: forward

Symbol	Name	Function Class
Gm7804	predicted gene 7804	343 bp downstream
Gm70809	predicted gene, 70809	184 bp downstream
Gm70814	predicted gene, 70814	within coordinates
Rr396588	regulatory region 396588	1819 bp downstream
Rr423578	regulatory region 423578	within coordinates
Slamf9	SLAM family member 9	203 bp upstream
Tssr10198	transcription start site region 10198	214 bp upstream
Tssr10199	transcription start site region 10199	230 bp upstream
Tssr10200	transcription start site region 10200	270 bp upstream
Tssr15219	transcription start site region 15219	8 bp downstream