rs31564116 SNP Detail

Summary

• ID
  rs31564116
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172302613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTA GGAACAGTGA AACATAACAG
  W
  GGAAATAAAA GATAGACTCT CTCAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
ss49751705	NES13028085	PERLEGEN	MM_PANEL2	f	SNP	T	A		T			T	A
ss120011350	PARCsnp_1.19753	PARC_SEQ	INBRED	f	SNP			T		A
ss120014415	PARCsnp_1.09784	PARC_SEQ	INBRED	f	SNP			T		A
ss320125595	CHEV_1_174405177	CHEVERUD	SCREENING_POP	f	SNP						A			A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
rs31564116					SNP	T	A	T	T	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751705	NES13028085	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172302613 () rs orientation: forward

Symbol	Name	Function Class
Gm7804	predicted gene 7804	232 bp downstream
Gm70809	predicted gene, 70809	73 bp downstream
Gm70814	predicted gene, 70814	within coordinates
Rr396588	regulatory region 396588	1708 bp downstream
Rr423578	regulatory region 423578	20 bp proximal
Slamf9	SLAM family member 9	314 bp upstream
Tssr10198	transcription start site region 10198	325 bp upstream
Tssr10199	transcription start site region 10199	341 bp upstream
Tssr10200	transcription start site region 10200	381 bp upstream
Tssr15219	transcription start site region 15219	119 bp downstream