rs31564118 SNP Detail

Summary

• ID
  rs31564118
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172302073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGCTGTC CTGACTTTTG
  CTCCTGCAAA AGACTTTCAT TACTCAAACT AAGAGGACTT CAGGAAGCGA TGGCTTTTGC
  TAGTCACCAA TCCCAGAGCT GATCCCCAGC CCATCACAAA GGTGTCTTAT GTCAACCTGT
  CTGCCGTTGC TCTGTGTAAC GCACATTCTC CTCAGTACTA TTGACATTGA CATTGCATGC
  R
  ACAAGGGTAC TCACCCAGTG AATCCTACTT GGTGGATGTT GGCTTGGGAA GTTCTGCACA
  CATGTGACAC CATCTCTGGG GAGCACCCAT AGTTCTCATC AGGTCATGTC TAATCTCTAC
  TCCTATAGGG AGCCTGAAGA GATGGAGAAG GAAAAACAAG TGTAGCCGAA AAGGCTGTGA
  CTACAAAAAT CTGTCAGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49751707	NES13028083	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31564118					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751707	NES13028083	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172302073 () rs orientation: forward

Symbol	Name	Function Class
Gm7804	predicted gene 7804	within coordinates
Gm70809	predicted gene, 70809	within coordinates
Gm70814	predicted gene, 70814	within coordinates
Rr396588	regulatory region 396588	1168 bp downstream
Rr423578	regulatory region 423578	560 bp proximal
Slamf9	SLAM family member 9	854 bp upstream
Tssr10198	transcription start site region 10198	865 bp upstream
Tssr10199	transcription start site region 10199	881 bp upstream
Tssr10200	transcription start site region 10200	921 bp upstream
Tssr15219	transcription start site region 15219	659 bp downstream