rs31564345 SNP Detail

Summary

• ID
  rs31564345
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:84010556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTATTTGTG AGCATTAAAG TGGCTTTGAA GACCCATTAA
  GGGAGAACTG TTTCCTCTTG GTCAAGAGAA TGGAACCTTC CTAAGGCCTA TCTAATTACC
  Y
  GAAATATGAG TTAATCCATC AGGCCAGTCA ATCAGCTGGC TAAGGGATTC TCTTTTCCCC
  CTTTTCCGCC CCTGGCTGCA GATTCACCTA ACACCATGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39302704	mCV23046305	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					C	T
ss48084125	NES12077393	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		T	C	C	C	C	C	C	T
ss148246443	ENSMUSSNP1773975	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31564345					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48084125	NES12077393	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:84010556 () rs orientation: forward

Symbol	Name	Function Class
Gm33432	predicted gene, 33432	923 bp upstream
Rr304808	regulatory region 304808	1956 bp distal
Rr304809	regulatory region 304809	645 bp proximal
Rr310901	regulatory region 310901	1876 bp distal
Rr310902	regulatory region 310902	within coordinates
Tssr132442	transcription start site region 132442	945 bp upstream
Tssr132443	transcription start site region 132443	968 bp upstream
Tssr132444	transcription start site region 132444	1002 bp upstream