rs31564881 SNP Detail

Summary

• ID
  rs31564881
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:93294361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCAGCAGTGA TGGTCTATGG CTGCAATCCT GGTTTTCAGA AGAGCAAAGC AAGAAGGTTT
  GAGACGAGCC CAGGCTACAA AACAAGACTT GATGCCAAAG ATCAAAAACA AAGCAAAGAT
  CCTTCTACTT CTATCGGTGG GTGCAGAACT CTTCCATCCT TACTTAGTAT TCTGGCCTCG
  TCTTCCTTTT ACTTCTACAT ATAGTTGCCC ATATATTGCC CAGATCTATA TTCTATAGAT
  ATATACATAT CTATATGCTT ATAATTCTGA CTAATTATTT AATACACAGA AATAACACCC
  Y
  CCCCCAAAGG CTTTTAGAAG ATCCCATCAT ATGCAGTCTA ATATTGAAAT TGTGGGCCAG
  ACATTTAGCA ACATTGGATT CCGAGGTCCA GCAGTTTCCT ATGGGATTAT AGCTTTCTAA
  CGGGTTCTCC ATTGATTCCT TAGTTCATGT GGTACTAGGG AATCAACACA GGGTTTTGTG
  CACGCAAGAC AAGCATCCTA CCAACTATAC TTCACCTCCA GCCCCCAGGT ATGTTTTAAA
  TAAGGTTATT TCTTATCATT CAGTCTAAAA TCTCACCTCC AAGCCTAATT CAGTATCCCT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss39302811	mCV25052614	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss148381130	ENSMUSSNP6850858	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31564881					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:93294361 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7581	CpG island 7581	1377 bp proximal
Pphln1	periphilin 1	1870 bp upstream
Rr312331	regulatory region 312331	239 bp proximal
Tssr132763	transcription start site region 132763	1502 bp upstream
Tssr132764	transcription start site region 132764	1518 bp upstream
Tssr132765	transcription start site region 132765	1864 bp upstream
Tssr132766	transcription start site region 132766	1947 bp upstream
Tssr135972	transcription start site region 135972	1712 bp downstream
Tssr135973	transcription start site region 135973	1783 bp downstream
Tssr135974	transcription start site region 135974	1865 bp downstream
Zcrb1	zinc finger CCHC-type and RNA binding motif 1	within coordinates