rs31564910 SNP Detail

Summary

• ID
  rs31564910
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172156317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAACTTCAG GTGGGCTTCT AGACAGTCTT CGTAGGGTCT
  AAGGTGATCT GACCTCCATC TACGGCCAGG AATGGGGAAG GATTCCCAGT GTCTGATCAT
  Y
  CCCAGAACAC GACTGCCCAG GGAGCCTACT GATGACATCC TAGCCATTGC CATCTCGAGA
  AAAGCTCTCT TCTTCATGGG ACAGGAAAGG TGTGCGGTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49752216	NES13029257	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T		C	T	C	C		C	T	C	T		T
ss120009212	PARCsnp_1.18684	PARC_SEQ	INBRED	f	SNP							C		T
ss120012419	PARCsnp_1.08477	PARC_SEQ	INBRED	f	SNP							C		T
ss146188067	ENSMUSSNP413192	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
ss320124242	CHEV_1_174258881	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31564910					SNP	T	T	T	T	C	T	C	C	T	C	C	T	C	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752216	NES13029257	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172156317 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	1795 bp distal
Gm70847	predicted gene, 70847	1824 bp downstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	Intron
Rr423530	regulatory region 423530	1890 bp distal
Rr423531	regulatory region 423531	within coordinates
Rr423532	regulatory region 423532	522 bp proximal
Tssr15213	transcription start site region 15213	511 bp downstream
Tssr15214	transcription start site region 15214	567 bp downstream