rs31565271 SNP Detail

Summary

• ID
  rs31565271
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:150869895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGT TTGTCTGTCT GTCTGTCTGT
  Y
  TGTTTGTTTG TTTGTTTGTT TTTAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45046347	mCV25101067	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs31565271					SNP	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss145712189	ENSMUSSNP3180059	ENSEMBL	ENSEMBL_Sanger	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:150869895 () rs orientation: forward

Symbol	Name	Function Class
Cpgi846	CpG island 846	351 bp distal
Gm29188	predicted gene 29188	within coordinates
Hmcn1	hemicentin 1	709 bp upstream
Rr420192	regulatory region 420192	1505 bp distal
Rr420193	regulatory region 420193	603 bp distal
Rr420194	regulatory region 420194	264 bp distal
Rr420195	regulatory region 420195	150 bp distal
Rr420196	regulatory region 420196	359 bp proximal
Tssr14167	transcription start site region 14167	989 bp upstream
Tssr14168	transcription start site region 14168	695 bp upstream