rs31565510 SNP Detail

Summary

• ID
  rs31565510
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172199455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTCATGGA AGGGCATTTG
  AAGCACCAGG TCCTGTCCTA GTGAGCTTTG GCTCCACTTG GGTACCCAGG AAACCTCGCA
  AGGTAGTTTG GCAGGAATGA CGTAAGCTGT AAGGTGGACT TGACAGATGA CAAGCGACAC
  ATCTATACAG AATGCATGCC CGGATCTCTG GGCAAAGCCT TGCAGAGAAA CTCAGAAGAT
  M
  CCAAGACTGA GTGGATCTCA ACTGTGCACA GTCTTTTTAC GTTGGTCTTC CCTTGAACTC
  AATTAACTGT AGCCTGAAAA CGAAGAGCCT TTGGTCTCTC CTTACTGTAA AGCTCACCGT
  TAGCCTCCAA CTCTCATCAA CAACCAGAAC CAGAAGAACC TGAATGTCTG AAACAAAGAG
  CAGAAGGCAA GAGCCAGCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45067397	mCV24593577	ABI	CRAMUS_MOUSE	f	SNP	C	C	A				C
ss49752059	NES13028963	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	C	C		C	C	C	C	C	A	C
ss146189541	ENSMUSSNP2640068	ENSEMBL	ENSEMBL_Sanger	f	SNP			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31565510					SNP	C	C	A	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752059	NES13028963	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172199455 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1046	CpG island 1046	1919 bp distal
Kcnj10	potassium inwardly-rectifying channel, subfamily J, member 10	within coordinates
Tssr10190	transcription start site region 10190	1403 bp downstream
Tssr10191	transcription start site region 10191	1187 bp downstream
Tssr10192	transcription start site region 10192	1007 bp downstream