rs31565664 SNP Detail

Summary

• ID
  rs31565664
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172155732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGATT AAGACTCATC AACCTTCCTT
  Y
  CTCTTTCCTG GGATTTGCCA TCTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49752220	NES13029254	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	C	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31565664					SNP	T	T	T	T	T	T	T	T	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752220	NES13029254	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172155732 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	1210 bp distal
Gm70847	predicted gene, 70847	1239 bp downstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423527	regulatory region 423527	1875 bp distal
Rr423529	regulatory region 423529	1832 bp distal
Rr423530	regulatory region 423530	1305 bp distal
Rr423531	regulatory region 423531	53 bp proximal
Rr423532	regulatory region 423532	1107 bp proximal
Tssr15210	transcription start site region 15210	1940 bp upstream
Tssr15211	transcription start site region 15211	1927 bp upstream
Tssr15212	transcription start site region 15212	1910 bp upstream
Tssr15213	transcription start site region 15213	1096 bp downstream
Tssr15214	transcription start site region 15214	1152 bp downstream