rs31565665 SNP Detail

Summary

• ID
  rs31565665
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172155703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTGCCAT ATGTCCCAAA
  GCCCACATTC CACACAAAGC CCAGATTCCA AGCAAAACCC ACCTGGTTTT GCTTCAAATT
  CTTCCCCCCT GAGAAGCACT CTGGGTTATA ATCTTCCCGG AGAGATGGAT GGCCAGAGTC
  GGTTCCTAGG CTTTCAGGGT CCCCTAGGAG ATATGGACCA TATGAACAGA AGTCTGTAGA
  R
  TAAGGATTAA GACTCATCAA CCTTCCTTTC TCTTTCCTGG GATTTGCCAT CTCCTCCCAT
  TCAGGGTGAG GGGTGGGGCA GGAAGGCTGG GGAAGTGGGG AGAGCAGGTG GCCCTGTGGG
  GGCAGAAATG TGACATAAGG ATCTCAGATG GTTTGGATGT TTGACCAGAT CCTAGGGAGA
  AACTGCATGA ATATATACCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49752221	NES13029253	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31565665					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752221	NES13029253	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172155703 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	1181 bp distal
Gm70847	predicted gene, 70847	1210 bp downstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423527	regulatory region 423527	1846 bp distal
Rr423529	regulatory region 423529	1803 bp distal
Rr423530	regulatory region 423530	1276 bp distal
Rr423531	regulatory region 423531	82 bp proximal
Rr423532	regulatory region 423532	1136 bp proximal
Tssr15210	transcription start site region 15210	1911 bp upstream
Tssr15211	transcription start site region 15211	1898 bp upstream
Tssr15212	transcription start site region 15212	1881 bp upstream
Tssr15213	transcription start site region 15213	1125 bp downstream
Tssr15214	transcription start site region 15214	1181 bp downstream