rs31565666 SNP Detail

Summary

• ID
  rs31565666
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172155682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGG TCCCCTAGGA GATATGGACC
  R
  TATGAACAGA AGTCTGTAGA ATAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45062840	mCV24595280	ABI	CRAMUS_MOUSE	f	SNP		G	G					A		G
ss49752222	NES13029252	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	A	G		G	G	G	A		A	G	G	G		G
ss120009206	PARCsnp_1.18681	PARC_SEQ	INBRED	f	SNP								A		G
ss120012414	PARCsnp_1.08474	PARC_SEQ	INBRED	f	SNP								A		G
ss146188053	ENSMUSSNP6712282	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							G
ss320124240	CHEV_1_174258246	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31565666					SNP	G	G	G	G	G	A	G	A	G	G	G	A	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752222	NES13029252	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172155682 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	1160 bp distal
Gm70847	predicted gene, 70847	1189 bp downstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423527	regulatory region 423527	1825 bp distal
Rr423529	regulatory region 423529	1782 bp distal
Rr423530	regulatory region 423530	1255 bp distal
Rr423531	regulatory region 423531	103 bp proximal
Rr423532	regulatory region 423532	1157 bp proximal
Tssr15210	transcription start site region 15210	1890 bp upstream
Tssr15211	transcription start site region 15211	1877 bp upstream
Tssr15212	transcription start site region 15212	1860 bp upstream
Tssr15213	transcription start site region 15213	1146 bp downstream
Tssr15214	transcription start site region 15214	1202 bp downstream