rs31565669 SNP Detail

Summary

• ID
  rs31565669
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172155284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGGA GATTGGGGGC CATGCGTGAG
  S
  TCAACTGCCC ACGGCAAGGA TGACG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J
ss49752225	NES13029249	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	G		C	C		G
ss120012407	PARCsnp_1.08471	PARC_SEQ	INBRED	f	SNP					G	C
ss320124238	CHEV_1_174257848	CHEVERUD	SCREENING_POP	f	SNP								G		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	SM/J
rs31565669					SNP	C	C	C	G	G	C	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752225	NES13029249	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172155284 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	762 bp distal
Gm70847	predicted gene, 70847	791 bp downstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423527	regulatory region 423527	1427 bp distal
Rr423528	regulatory region 423528	1799 bp distal
Rr423529	regulatory region 423529	1384 bp distal
Rr423530	regulatory region 423530	857 bp distal
Rr423531	regulatory region 423531	501 bp proximal
Rr423532	regulatory region 423532	1555 bp proximal
Tssr15210	transcription start site region 15210	1492 bp upstream
Tssr15211	transcription start site region 15211	1479 bp upstream
Tssr15212	transcription start site region 15212	1462 bp upstream
Tssr15213	transcription start site region 15213	1544 bp downstream
Tssr15214	transcription start site region 15214	1600 bp downstream