rs31565671 SNP Detail

Summary

• ID
  rs31565671
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172154768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AATAAATCTT TTAAAAAAAG AATAAAGAAT TATGAGAGAG
  AGAGAGAGAG AGTTGTACAG ATTACACAGA TAAAGAGCAC AAACTGGGTG TCGAAGTTCA
  R
  TAAGAGGCAT TAGCCATCTC GATGTCACAG ATCTCAGCGT CACTACCTCA AGCTGGTGTA
  TGTAGCAACT CACAGGCACC CCGGATCAGA CATTTAGGGT A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49752227	NES13029247	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	G	G	G	A	G	G	G	G
ss146188029	ENSMUSSNP427520	ENSEMBL	ENSEMBL_Sanger	f	SNP		G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31565671					SNP	G	G	G	A	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752227	NES13029247	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172154768 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	246 bp distal
Gm70847	predicted gene, 70847	275 bp downstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423524	regulatory region 423524	1821 bp distal
Rr423527	regulatory region 423527	911 bp distal
Rr423528	regulatory region 423528	1283 bp distal
Rr423529	regulatory region 423529	868 bp distal
Rr423530	regulatory region 423530	341 bp distal
Rr423531	regulatory region 423531	1017 bp proximal
Tssr15210	transcription start site region 15210	976 bp upstream
Tssr15211	transcription start site region 15211	963 bp upstream
Tssr15212	transcription start site region 15212	946 bp upstream