rs31565673 SNP Detail

Summary

• ID
  rs31565673
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172154749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGA TTACACAGAT AAAGAGCACA
  R
  ACTGGGTGTC GAAGTTCAAT AAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss49752229	NES13029246	PERLEGEN	MM_PANEL2	f	SNP		G	A		G	G	G	G		A	G	G
ss120012399	PARCsnp_1.08467	PARC_SEQ	INBRED	f	SNP				A		G
ss146188026	ENSMUSSNP4723026	ENSEMBL	ENSEMBL_Sanger	f	SNP	G					G
ss320124234	CHEV_1_174257313	CHEVERUD	SCREENING_POP	f	SNP									G				G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs31565673					SNP	G	G	A	A	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752229	NES13029246	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172154749 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	227 bp distal
Gm70847	predicted gene, 70847	256 bp downstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423524	regulatory region 423524	1802 bp distal
Rr423527	regulatory region 423527	892 bp distal
Rr423528	regulatory region 423528	1264 bp distal
Rr423529	regulatory region 423529	849 bp distal
Rr423530	regulatory region 423530	322 bp distal
Rr423531	regulatory region 423531	1036 bp proximal
Tssr15210	transcription start site region 15210	957 bp upstream
Tssr15211	transcription start site region 15211	944 bp upstream
Tssr15212	transcription start site region 15212	927 bp upstream