rs31565899 SNP Detail

Summary

• ID
  rs31565899
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:44237968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGAA TGGCGACCGC TCTTCTCTTT
  Y
  TGCCAGCGGG CCCCTCGTCT CTCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45046711	mCV24679990	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss149023678	ENSMUSSNP3660398	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss319706549	CHEV_1_44255653	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31565899					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:44237968 () rs orientation: forward

Symbol	Name	Function Class
Cpgi227	CpG island 227	within coordinates
Rr410478	regulatory region 410478	within coordinates