rs31566067 SNP Detail

Summary

• ID
  rs31566067
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172118083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTGTTCATT TGTACCTTTG CTCTCCAAGA AGAACCCCCT
  ACACCGTTAG CGGCAAAACT GCGATCTGAT GTGGAGAGCC CACAGGTTTC TTTTCTGCCC
  R
  TCTTCCTTCC ACCTCAGACC ACAAGACAGA AAGAGGCGGA CCATCTCAGA TACCTTATGC
  CCCGACTTGG GTGCAGCCAG TCCCTGACAT CTACCTGAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss49752425	NES13029397	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	G	A		A		G	A	A		A
ss120008664	PARCsnp_1.18410	PARC_SEQ	INBRED	f	SNP								G	A
ss120011749	PARCsnp_1.08142	PARC_SEQ	INBRED	f	SNP								G	A
ss146186775	ENSMUSSNP1281152	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A
ss320123917	CHEV_1_174220647	CHEVERUD	SCREENING_POP	f	SNP										A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs31566067					SNP	A	A	A	A	A	G	A	G	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752425	NES13029397	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172118083 () rs orientation: forward

Symbol	Name	Function Class
Atp1a2	ATPase, Na+/K+ transporting, alpha 2 polypeptide	within coordinates
Gm39704	predicted gene, 39704	1222 bp upstream
Gm57554	predicted gene, 57554	within coordinates
Tssr15205	transcription start site region 15205	1118 bp upstream
Tssr15206	transcription start site region 15206	807 bp downstream