rs31566070 SNP Detail

Summary

• ID
  rs31566070
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172117934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGAGATGAT CCGGAGGTCA GCAGGGACAC GGTCTCCACC
  CTTCACCTCC ACCAGGTCTC CCACCACCAC CTCCTCTGCA TTGATCTGCA TCTTTTCTCC
  Y
  TCTCGGATGA CCAGAGCTTG CTGCGGAAAG GCCAGGAGCC CGTCATGAGT TGTTCATTTG
  TACCTTTGCT CTCCAAGAAG AACCCCCTAC ACCGTTAGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49752428	NES13029394	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C	T		C	T	C	C		C	T	C	T		T
ss120008661	PARCsnp_1.18409	PARC_SEQ	INBRED	f	SNP								C		T
ss120011747	PARCsnp_1.08141	PARC_SEQ	INBRED	f	SNP								C		T
ss146186769	ENSMUSSNP772615	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss320123916	CHEV_1_174220498	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31566070					SNP	T	T	T	T	T	C	T	C	C	T	C	C	T	C	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752428	NES13029394	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172117934 () rs orientation: forward

Symbol	Name	Function Class
Atp1a2	ATPase, Na+/K+ transporting, alpha 2 polypeptide	within coordinates
Gm39704	predicted gene, 39704	1073 bp upstream
Gm57554	predicted gene, 57554	within coordinates
Tssr15205	transcription start site region 15205	969 bp upstream
Tssr15206	transcription start site region 15206	956 bp downstream