rs31566071 SNP Detail

Summary

• ID
  rs31566071
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172117874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACAGAGG TAGCATGTAG
  CCATCATATG CTGGAAGGAG GTATACCAGG TACAGGGGAG ACCTTAATGT TTGCATTTTT
  TTTTTAACTT TTAAGCTTTC ATGTGGGCCT CTCTTAACTG TACAGATTCA GCCGTGACCT
  CCTCACCTTG CAACCGTGGG AAGAGATGAT CCGGAGGTCA GCAGGGACAC GGTCTCCACC
  Y
  TTCACCTCCA CCAGGTCTCC CACCACCACC TCCTCTGCAT TGATCTGCAT CTTTTCTCCC
  TCTCGGATGA CCAGAGCTTG CTGCGGAAAG GCCAGGAGCC CGTCATGAGT TGTTCATTTG
  TACCTTTGCT CTCCAAGAAG AACCCCCTAC ACCGTTAGCG GCAAAACTGC GATCTGATGT
  GGAGAGCCCA CAGGTTTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49752429	NES13029393	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31566071					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752429	NES13029393	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172117874 () rs orientation: forward

Symbol	Name	Function Class
Atp1a2	ATPase, Na+/K+ transporting, alpha 2 polypeptide	within coordinates
Gm39704	predicted gene, 39704	1013 bp upstream
Gm57554	predicted gene, 57554	within coordinates
Tssr15205	transcription start site region 15205	909 bp upstream
Tssr15206	transcription start site region 15206	1016 bp downstream