rs31566254 SNP Detail

Summary

• ID
  rs31566254
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172196041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTC ACTGCATTGC ATGTATTGCA
  R
  TTATGTGTCT AATTCACATG GGTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49752064	NES13029004	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A		G	G	A	A	A	G
ss120009834	PARCsnp_1.18995	PARC_SEQ	INBRED	f	SNP						A	G
ss120013115	PARCsnp_1.08825	PARC_SEQ	INBRED	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31566254					SNP	A	A	A	A	A	A	G	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752064	NES13029004	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172196041 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1045	CpG island 1045	455 bp proximal
Cpgi1046	CpG island 1046	1310 bp proximal
Kcnj10	potassium inwardly-rectifying channel, subfamily J, member 10	within coordinates
Rr423550	regulatory region 423550	494 bp proximal
Tssr10190	transcription start site region 10190	1999 bp upstream