rs31566294 SNP Detail

Summary

• ID
  rs31566294
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172154735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGACAGCGGC AGTGTAATCA TATACATTAA GTAAATAAAT
  CTTTTAAAAA AAGAATAAAG AATTATGAGA GAGAGAGAGA GAGAGTTGTA CAGATTACAC
  R
  GATAAAGAGC ACAAACTGGG TGTCGAAGTT CAATAAGAGG CATTAGCCAT CTCGATGTCA
  CAGATCTCAG CGTCACTACC TCAAGCTGGT GTATGTAGCA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49752230	NES13029245	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31566294					SNP	G	G	G	A	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752230	NES13029245	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172154735 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	213 bp distal
Gm70847	predicted gene, 70847	242 bp downstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423524	regulatory region 423524	1788 bp distal
Rr423527	regulatory region 423527	878 bp distal
Rr423528	regulatory region 423528	1250 bp distal
Rr423529	regulatory region 423529	835 bp distal
Rr423530	regulatory region 423530	308 bp distal
Rr423531	regulatory region 423531	1050 bp proximal
Tssr15210	transcription start site region 15210	943 bp upstream
Tssr15211	transcription start site region 15211	930 bp upstream
Tssr15212	transcription start site region 15212	913 bp upstream