rs31566295 SNP Detail

Summary

• ID
  rs31566295
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172154184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGTCAGGTA GCGGTAGGTC
  TCGCGGACGT TGCCCTGCTG CACGTTACAG CGACCGTCCT TCTCCACGTA GCGCTGGCGA
  CCGCGGCGGC GTGGCGGCTC CTCCGACCCG GGAGAGAAAG CGGCGTTCTC CTGCGCCATG
  GCGGCCGCAG CGGGGATCCT GCGGGGTCTT AATAAAGGTG TGCCGAGTTG ATGGATCTGC
  M
  CCGAACTCAG GGCCAATGCT GTGAGACAAT CTCCCTTCCT GTCTCTTTAG CCTTAGTTTT
  TCCCCACTGG TGGATTGGGA ACGATAATCC CTAACATCCC ATAAATCTCA GAAAGTTGGG
  GGACAGGTGC TGGGGAGATG GCTCAAATGA TTCACTGGTT GCTCTTCCAG CGGATCTTAT
  TTCGATTCCC AGCACCCTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49752231	NES13029271	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31566295					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752231	NES13029271	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172154184 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	within coordinates
Gm70847	predicted gene, 70847	within coordinates
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423524	regulatory region 423524	1237 bp distal
Rr423525	regulatory region 423525	1691 bp distal
Rr423526	regulatory region 423526	1501 bp distal
Rr423527	regulatory region 423527	327 bp distal
Rr423528	regulatory region 423528	699 bp distal
Rr423529	regulatory region 423529	284 bp distal
Rr423530	regulatory region 423530	222 bp proximal
Rr423531	regulatory region 423531	1601 bp proximal
Tssr15210	transcription start site region 15210	392 bp upstream
Tssr15211	transcription start site region 15211	379 bp upstream
Tssr15212	transcription start site region 15212	362 bp upstream