rs31566298 SNP Detail

Summary

• ID
  rs31566298
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172153047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTTC AAAGTGACAT AGCTGTCAGG
  Y
  CAGGGCCTCA AGCTAGTGCC ATTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45122963	mCV24595315	ABI	CRAMUS_MOUSE	f	SNP		T						C		T
ss49752238	NES13029265	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C	T		C	T	T	T		T	T	T	T		T
ss120009173	PARCsnp_1.18665	PARC_SEQ	INBRED	f	SNP								C		T
ss120012374	PARCsnp_1.08454	PARC_SEQ	INBRED	f	SNP								C		T
ss146187964	ENSMUSSNP1994706	ENSEMBL	ENSEMBL_Sanger	f	SNP		T								T
ss320124220	CHEV_1_174255611	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31566298					SNP	T	T	T	T	T	C	T	C	C	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752238	NES13029265	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172153047 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	64 bp proximal
Gm36937	predicted gene, 36937	1819 bp downstream
Gm70847	predicted gene, 70847	800 bp upstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423524	regulatory region 423524	100 bp distal
Rr423525	regulatory region 423525	554 bp distal
Rr423526	regulatory region 423526	364 bp distal
Rr423527	regulatory region 423527	310 bp proximal
Rr423528	regulatory region 423528	417 bp proximal
Rr423529	regulatory region 423529	832 bp proximal
Rr423530	regulatory region 423530	1359 bp proximal
Tssr15210	transcription start site region 15210	738 bp downstream
Tssr15211	transcription start site region 15211	748 bp downstream
Tssr15212	transcription start site region 15212	768 bp downstream