rs31566300 SNP Detail

Summary

• ID
  rs31566300
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172152629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTA GGCCTGAGTG AAAGTACTGA
  Y
  GTCACCGTTC CTTCTGGAAA GGGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ
ss49752240	NES13029279	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ
rs31566300					SNP	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752240	NES13029279	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172152629 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	482 bp proximal
Gm36937	predicted gene, 36937	1401 bp downstream
Gm70847	predicted gene, 70847	1218 bp upstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423524	regulatory region 423524	within coordinates
Rr423525	regulatory region 423525	136 bp distal
Rr423526	regulatory region 423526	33 bp proximal
Rr423527	regulatory region 423527	728 bp proximal
Rr423528	regulatory region 423528	835 bp proximal
Rr423529	regulatory region 423529	1250 bp proximal
Rr423530	regulatory region 423530	1777 bp proximal
Tssr15210	transcription start site region 15210	1156 bp downstream
Tssr15211	transcription start site region 15211	1166 bp downstream
Tssr15212	transcription start site region 15212	1186 bp downstream