rs31566303 SNP Detail

Summary

• ID
  rs31566303
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172152415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAATGGGCA TGGGCTAGAA CCAGCCTAGT TGGAGTGAAG
  GAGGAGAGGG GAGTGGGAAG ACCTGAGGTG GCCATGGAGA AGATGATGTT TTTGTCTAGG
  Y
  CCAGGAGCCA GGTTTCAAGG CTAGCAGCAG GGAGCTAGCC TGTCCGTAGC AGCTCCGCAG
  CTCCTCCTAG TGGCCTCTTG GTTCACCTGC GTCTTCCTTA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49752243	NES13029277	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31566303					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49752243	NES13029277	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172152415 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	696 bp proximal
Gm36937	predicted gene, 36937	1187 bp downstream
Gm70847	predicted gene, 70847	1432 bp upstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423524	regulatory region 423524	within coordinates
Rr423525	regulatory region 423525	57 bp proximal
Rr423526	regulatory region 423526	247 bp proximal
Rr423527	regulatory region 423527	942 bp proximal
Rr423528	regulatory region 423528	1049 bp proximal
Rr423529	regulatory region 423529	1464 bp proximal
Rr423530	regulatory region 423530	1991 bp proximal
Tssr15210	transcription start site region 15210	1370 bp downstream
Tssr15211	transcription start site region 15211	1380 bp downstream
Tssr15212	transcription start site region 15212	1400 bp downstream