rs31566597 SNP Detail

Summary

• ID
  rs31566597
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:15895453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGAGGCT TAAGATTTAA
  GAGCAAAGGG CTGCTTCAGA AGAAATTTAG AAGGAGCAGG CCAGCAGATG ATGTCAGCTG
  ATTTATATAA TTTTTTTGTT TTGTGTGTAT GTGTACTTTG ATTGTGTACG TATGTTCATC
  ATGTGCGTGT AGTGTCTGCG AAGGCCAGAA GGGGGCTTTG GATACCCAGA ACAAGGCAAT
  Y
  GTGGGCCACG CAATGGATAC TGGGAACTGT ACCCTGCCGG GTCAATGTTC TTAATCTCCA
  AGCCGTCTGT CTCTCCAGCT CCTGATTTAT AATTTTAAGC ATTCCTCATA GACTCCTGTG
  ATATCAGCGA CTTCCTGTGA TATCAGAGGT TGGAAATCAG GAACTCAGGC AGGAGAAGAG
  GAGTGGAGGC TGGACTGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46046088	mCV27566784	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss148378198	ENSMUSSNP3190270	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31566597					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:15895453 () rs orientation: forward

Symbol	Name	Function Class
Rr155078	regulatory region 155078	within coordinates
Rr160786	regulatory region 160786	548 bp proximal
Rr164335	regulatory region 164335	509 bp distal
Slc8a2	solute carrier family 8 (sodium/calcium exchanger), member 2	465 bp downstream
Tssr64587	transcription start site region 64587	1334 bp downstream
Tssr64588	transcription start site region 64588	1318 bp downstream