rs31566661 SNP Detail

Summary

• ID
  rs31566661
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153563477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAAAATAT GAAATTAAAA
  TTTAAATGCA TATTTAATTT ATATTTTGGT ATTATTTTAT CTTGTTTCAT AGAAATAGGA
  ACTCAAGGTC TCATACACAC TTTAAAGCAT GCTATCCTGG AGAATTAAAT TTCTCATGAA
  CATTTACTAC TTTATGAAAG TCTCATATCC TTGCAAATGA CATTTAAAGA AGAAATCCTG
  Y
  TACTCAGTCA AATTTATAAA CAAAATACCA AAAAGTAACA GAAAACTCAG CAGAGAGATG
  AGTCTGCAAA CATATTTGTT TTAAAGGCAG GGACTAACAC TGTTCACTGC TATGCAGTGA
  CACAGTTGTA AATGTCACCC AGGGATAAGA TGAGACATCA GAAAGCCACC TGCCGAAGAA
  TACAACAACC ATTGTAGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45546749	mCV23503687	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss136114482	ENSMUSSNP1624573	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31566661					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153563477 () rs orientation: forward

Symbol	Name	Function Class
Msh4	mutS homolog 4	within coordinates
Rr587780	regulatory region 587780	617 bp proximal